Intro Stats

• ​Statistical inference for everyone - a free online textbook (and python module) for learning basic stats
• ​An Introduction to Statistical Learning with Applications in R - lets call this 'Intermediate'
• ​A little book of R for bioinformatics - From scratch, get-up-and-go guide. Good for beginners.

Bayesian

• [​http://technology.stitchfix.com/blog/2015/02/12/may-bayes-theorem-be-with-you/ Bayesian vs frequentist thinking.
• ​Thorough but gentle introduction to bayesian inference and MCMC
• ​Creative application of ABC. How many socks does Karl Broman have?
• ​Introduction to statistical data analysis in Python – frequentist and Bayesian methods

GWAS

• ​Great intro to history, methods, and application of GWAS